I've only started breeding in SS, so I only have a few different Pokemon in stock:
JoshR691's Pokemon
Vulpix (x 5)
Charmander (x 15)
Pichu (x 19)
Cyndaquil (x 11)
Totodile (x 13)
Phanpy (x 22)
Togepi (x 16)
Snorlax (x 1)
Scyther (x 2)
Ralts (x 9)
Marill( x 3)
Grimer (x 2)
Edit: Added a few Pokemon to the list
JoshR691's Pokemon
Vulpix (x 5)
Charmander (x 15)
Pichu (x 19)
Cyndaquil (x 11)
Totodile (x 13)
Phanpy (x 22)
Togepi (x 16)
Snorlax (x 1)
Scyther (x 2)
Ralts (x 9)
Marill( x 3)
Grimer (x 2)
Edit: Added a few Pokemon to the list